STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0845Conserved hypothetical protein. (95 aa)    
Predicted Functional Partners:
CPS_0846
Conserved hypothetical protein; Identified by similarity to GP:28808041; match to protein family HMM PF05114.
 
  
 0.950
CPS_0847
Conserved hypothetical protein; Identified by similarity to OMNI:CC3256.
 
  
 0.938
CPS_0811
Conserved hypothetical protein; Identified by similarity to GP:28808041.
 
  
 0.885
CPS_3406
Conserved hypothetical protein; Identified by similarity to OMNI:CC2906; match to protein family HMM PF05114; Belongs to the UPF0276 family.
 
  
 0.876
CPS_0810
Conserved hypothetical protein; Identified by similarity to OMNI:CC3256.
 
  
 0.856
CPS_0809
DoxD family protein; Identified by similarity to GP:28808043; match to protein family HMM PF07681.
 
  
 0.823
CPS_3395
Identified by match to protein family HMM PF07681.
 
  
 0.823
CPS_3405
Conserved domain protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:CC2905.
 
  
 0.815
CPS_0481
FHA domain protein; Identified by similarity to OMNI:NTL01BL0696; match to protein family HMM PF00498.
   
    0.483
CPS_0998
FHA domain protein; Identified by match to protein family HMM PF00498.
   
    0.483
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.