STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (564 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase; Identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225.
 
 0.999
hutI
Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
 
 0.998
hutC
Histidine utilization repressor; Identified by similarity to SP:P12380; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018.
 
  
 0.855
CPS_4352
Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.
 
  
 0.793
CPS_4353
N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.
 
  
 0.683
CPS_2573
Identified by match to protein family HMM PF01979; match to protein family HMM PF07676.
  
  
 0.572
CPS_0248
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.
 
  
 0.546
CPS_0268
Putative Xaa-Pro dipeptidase; Identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969.
  
  
 0.527
CPS_0535
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
  
  
 0.527
CPS_1348
Putative Xaa-Pro dipeptidase; Identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969.
  
  
 0.527
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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