hutI protein (Colwellia psychrerythraea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hutI

Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family. (418 aa)

Predicted Functional Partners:

hutU

0.998

CPS_4352

0.977

CPS_4353

0.942

hutH

0.939

hutC

0.883

CPS_0248

0.516

speB

0.504

Your Current Organism:

Colwellia psychrerythraea

NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPS_0248	CPS_4352	CPS_0248	CPS_4352	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	0.635
CPS_0248	CPS_4353	CPS_0248	CPS_4353	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.	0.747
CPS_0248	hutC	CPS_0248	CPS_0910	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	Histidine utilization repressor; Identified by similarity to SP:P12380; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018.	0.806
CPS_0248	hutH	CPS_0248	CPS_0908	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	Histidine ammonia-lyase; Identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225.	0.463
CPS_0248	hutI	CPS_0248	CPS_0911	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family.	0.516
CPS_0248	hutU	CPS_0248	CPS_0909	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.546
CPS_4352	CPS_0248	CPS_4352	CPS_0248	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	0.635
CPS_4352	CPS_4353	CPS_4352	CPS_4353	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.	0.990
CPS_4352	hutC	CPS_4352	CPS_0910	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	Histidine utilization repressor; Identified by similarity to SP:P12380; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018.	0.729
CPS_4352	hutH	CPS_4352	CPS_0908	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	Histidine ammonia-lyase; Identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225.	0.689
CPS_4352	hutI	CPS_4352	CPS_0911	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family.	0.977
CPS_4352	hutU	CPS_4352	CPS_0909	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.793
CPS_4353	CPS_0248	CPS_4353	CPS_0248	N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	0.747
CPS_4353	CPS_4352	CPS_4353	CPS_4352	N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	0.990
CPS_4353	hutC	CPS_4353	CPS_0910	N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.	Histidine utilization repressor; Identified by similarity to SP:P12380; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018.	0.650
CPS_4353	hutH	CPS_4353	CPS_0908	N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.	Histidine ammonia-lyase; Identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225.	0.577
CPS_4353	hutI	CPS_4353	CPS_0911	N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.	Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family.	0.942
CPS_4353	hutU	CPS_4353	CPS_0909	N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.683
hutC	CPS_0248	CPS_0910	CPS_0248	Histidine utilization repressor; Identified by similarity to SP:P12380; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962.	0.806
hutC	CPS_4352	CPS_0910	CPS_4352	Histidine utilization repressor; Identified by similarity to SP:P12380; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018.	Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.	0.729

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About