STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0950Conserved hypothetical protein; Identified by similarity to GP:27361086. (119 aa)    
Predicted Functional Partners:
CPS_0951
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.953
pstA
Phosphate ABC transporter, permease protein; Identified by similarity to GP:1369911; match to protein family HMM PF00528; match to protein family HMM TIGR00974.
  
  
 0.884
CPS_0524
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.770
CPS_0525
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.769
CPS_0952
GGDEF/EAL domain protein; Identified by similarity to GP:6759486; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.764
CPS_4396
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.759
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
  
  
 0.731
CPS_0310
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
   
 0.573
CPS_0309
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
     0.561
CPS_5026
Chain length determinant family protein; Identified by match to protein family HMM PF02706.
  
     0.506
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.