STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fsxAfxsA protein; Identified by similarity to SP:P37147; match to protein family HMM PF04186. (172 aa)    
Predicted Functional Partners:
CPS_4343
Thioredoxin domain protein; Identified by match to protein family HMM PF00085.
  
    0.718
hslV
ATP-dependent protease HslVU, HslV subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
   
    0.681
cutA
Periplasmic divalent cation tolerance protein CutA; Identified by similarity to SP:P36654; match to protein family HMM PF03091.
     
 0.656
groES
Chaperone protein GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
  
  
 0.599
dsbD
Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.
     
 0.593
CPS_2075
Putative lipoprotein; Identified by similarity to GP:28805614; match to protein family HMM PF07969.
  
    0.460
CPS_2078
Conserved hypothetical protein; Identified by similarity to OMNI:SOA0099; match to protein family HMM PF07969.
  
    0.460
CPS_2795
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
  
    0.460
ibpA
Chaperone protein IbpA; Identified by similarity to SP:P29209; match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.
   
    0.455
hslU
Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
   
    0.451
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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