STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0978Transcription regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (339 aa)    
Predicted Functional Partners:
CPS_0977
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.738
CPS_0761
Putative glutamate synthase, ferredoxin-dependent; Identified by similarity to SP:P55037; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
    
 
 0.708
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
    
 
 0.708
ptsO
Phosphocarrier protein NPr; Identified by similarity to SP:P33996; match to protein family HMM PF00381; match to protein family HMM TIGR01003.
   
 
 0.596
CPS_3961
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
   
 0.503
CPS_0975
Putative membrane protein; Identified by similarity to OMNI:NTL01NM01971; match to protein family HMM PF07690.
 
   
 0.501
CPS_3957
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
   
 0.498
CPS_2648
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
 
  
 0.485
CPS_0983
Glycosyl hydrolase, family 31; Identified by match to protein family HMM PF01055; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.460
CPS_0985
Putative alpha amylase; Identified by similarity to SP:Q05884; match to protein family HMM PF00128.
 
  
 0.426
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.