STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0984Identified by match to protein family HMM PF00128. (538 aa)    
Predicted Functional Partners:
abG
Beta-glucosidase; Identified by similarity to SP:P12614; match to protein family HMM PF00232.
 
 
 0.934
CPS_2648
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
 
 
 0.931
CPS_0506
Putative sucrose phosphorylase; Identified by similarity to SP:P33910; match to protein family HMM PF00128.
  
  
 
0.914
xarB
Xylosidase/arabinosidase; Identified by similarity to GP:7259476; match to protein family HMM PF00933; match to protein family HMM PF01915.
   
 
 0.905
CPS_2379
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
   
 
 0.905
CPS_3692
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
   
 
 0.905
CPS_3725
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
   
 
 0.905
bglX
Periplasmic beta-glucosidase; Identified by similarity to SP:P33363; match to protein family HMM PF00933; match to protein family HMM PF01915.
   
 
 0.905
CPS_3740
Putative endoglucanase A; Identified by similarity to GP:43409; match to protein family HMM PF00933; match to protein family HMM PF01915.
   
 
 0.905
CPS_3370
Alpha-amylase; Identified by similarity to SP:P22630; match to protein family HMM PF00128.
     
 0.903
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.