STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0985Putative alpha amylase; Identified by similarity to SP:Q05884; match to protein family HMM PF00128. (604 aa)    
Predicted Functional Partners:
CPS_0996
Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02103; Belongs to the glycosyl hydrolase 13 family.
  
 0.982
CPS_1694
Putative pullulanase; Identified by match to protein family HMM PF02922; match to protein family HMM TIGR02103; Belongs to the glycosyl hydrolase 13 family.
  
 0.975
CPS_0984
Identified by match to protein family HMM PF00128.
    
0.799
CPS_0983
Glycosyl hydrolase, family 31; Identified by match to protein family HMM PF01055; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.602
CPS_0388
Putative amino acid permease; Identified by match to protein family HMM PF00324.
   
 0.591
CPS_2029
Amino acid permease family protein; Identified by similarity to SP:P33016; match to protein family HMM PF00324.
   
 0.591
CPS_2040
Amino acid permease family protein; Identified by similarity to SP:O06005; match to protein family HMM PF00324.
   
 0.591
CPS_0974
Putative sugar-binding protein; Identified by match to protein family HMM PF00532.
 
  
 0.455
abG
Beta-glucosidase; Identified by similarity to SP:P12614; match to protein family HMM PF00232.
 
  
 0.432
CPS_0978
Transcription regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
 
  
 0.426
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.