STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1009Conserved hypothetical protein; Identified by similarity to OMNI:SO3337; match to protein family HMM PF01590. (486 aa)    
Predicted Functional Partners:
CPS_0287
Conserved hypothetical protein; Identified by similarity to OMNI:SO0013.
  
     0.723
CPS_0704
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00357.
  
     0.569
CPS_1203
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00759.
  
     0.562
fliH
Flagellar assembly protein FliH; Identified by match to protein family HMM PF02108.
  
     0.534
CPS_3884
Conserved hypothetical protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.
  
    0.505
CPS_1010
Conserved hypothetical protein; Identified by similarity to OMNI:SO3587.
       0.479
CPS_1507
Putative flagellar hook-length control protein; Identified by match to protein family HMM PF02120.
  
     0.470
CPS_2661
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.454
CPS_4566
Putative MSHA biogenesis protein MshO; Identified by similarity to OMNI:VC0412; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.445
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
       0.439
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.