STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1173Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746. (391 aa)    
Predicted Functional Partners:
CPS_1174
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMB00680.
 
   
 0.826
CPS_1175
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
   
 0.646
CPS_1172
Class II aldolase/adducin domain protein; Identified by similarity to SP:Q9HYH5; match to protein family HMM PF00596.
 
   
 0.637
CPS_2880
Putative lipoprotein.
 
    0.512
CPS_1026
Identified by match to protein family HMM PF01869.
 
    0.462
panE
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.453
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
    0.449
eda
KHG/KDPG aldolase; Identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182.
 
   
 0.434
CPS_2035
Oxidoreductase, FAD-binding/iron-sulfur cluster binding protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00970; match to protein family HMM PF03473; match to protein family HMM PF08030.
  
  
 0.424
CPS_0404
Oxidoreductase, NAD/FAD/2Fe-2S iron-sulfur cluster binding protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
  
  
 0.408
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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