STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1196Arginase family protein; Identified by similarity to SP:P37819; match to protein family HMM PF00491; Belongs to the arginase family. (368 aa)    
Predicted Functional Partners:
CPS_2859
ATP-binding protein.
  
 
 0.927
CPS_4320
Identified by match to protein family HMM PF01564.
  
 
 0.927
CPS_4663
Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.914
speE
Spermine/spermidine synthase family protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
  
  0.913
argF
Ornithine carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658.
 
  
 0.642
CPS_4886
Putative ornithine cyclodeaminase; Identified by similarity to SP:P09773; match to protein family HMM PF02423.
  
 
 0.636
CPS_2747
Putative ornithine cyclodeaminase; Identified by match to protein family HMM PF02423.
  
 
 0.632
argHA
Argininosuccinate lyase/amino-acid N-acetyltransferase; Identified by similarity to SP:Q9K3D6; match to protein family HMM PF00206; match to protein family HMM PF00583; match to protein family HMM TIGR00838; In the N-terminal section; belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
  
 
 0.601
CPS_4677
Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
   
 0.579
lhpI
Putative ornithine cyclodeaminase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using preferentially NADPH over NADH as the electron donor. Together with LhpH, is involved in a metabolic pathway that converts trans-3-hydroxy-L-proline (t3LHyp) to L-proline. To a much lesser extent, can also reduce Delta(1)-piperideine-2-carboxylate (Pip2C) to L-pipecolate in vitro; however, this activity has likely no physiological significance in vivo since C.psychrerythraea probably possesses no ability to metabolize D-lysine via the L-pipecolate pathway. Does not [...]
  
 
 0.576
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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