STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1206Putative outer membrane porin; Identified by match to protein family HMM PF00267. (340 aa)    
Predicted Functional Partners:
CPS_1530
vacJ lipoprotein; Identified by match to protein family HMM PF04333.
   
 
 0.689
CPS_2152
Thrombospondin type 3 repeat family protein/Calx-beta domain protein; Identified by match to protein family HMM PF03160.
  
    0.570
CPS_1195
Intimin/invasin family protein.
  
    0.551
CPS_0067
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
   
 0.525
CPS_0637
Conserved hypothetical protein; Identified by similarity to OMNI:SO0615.
  
     0.475
CPS_0065
Putative nicotinamide mononucleotide transporter PnuC; Identified by similarity to SP:P31215; match to protein family HMM PF04973; match to protein family HMM TIGR01528.
  
     0.448
CPS_0482
Serine protease; Identified by similarity to SP:Q92743; match to protein family HMM PF00089.
  
 
 
 0.448
CPS_0016
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.447
CPS_4100
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.446
CPS_1594
Identified by similarity to OMNI:SO3155; match to protein family HMM PF01734.
  
     0.445
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.