Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CPS_1260 | CPS_1261 | Putative nitrate/nitrite DNA-binding response regulator; Identified by similarity to SP:P10957; match to protein family HMM PF00072; match to protein family HMM PF00196. | Sensor histidine kinase; Identified by similarity to GP:13641465; match to protein family HMM PF02518; match to protein family HMM PF07730. | 0.940 |
CPS_1260 | CPS_1262 | Putative nitrate/nitrite DNA-binding response regulator; Identified by similarity to SP:P10957; match to protein family HMM PF00072; match to protein family HMM PF00196. | Hypothetical protein; Identified by Glimmer2; putative. | 0.545 |
CPS_1261 | CPS_1260 | Sensor histidine kinase; Identified by similarity to GP:13641465; match to protein family HMM PF02518; match to protein family HMM PF07730. | Putative nitrate/nitrite DNA-binding response regulator; Identified by similarity to SP:P10957; match to protein family HMM PF00072; match to protein family HMM PF00196. | 0.940 |
CPS_1261 | CPS_1262 | Sensor histidine kinase; Identified by similarity to GP:13641465; match to protein family HMM PF02518; match to protein family HMM PF07730. | Hypothetical protein; Identified by Glimmer2; putative. | 0.567 |
CPS_1262 | CPS_1260 | Hypothetical protein; Identified by Glimmer2; putative. | Putative nitrate/nitrite DNA-binding response regulator; Identified by similarity to SP:P10957; match to protein family HMM PF00072; match to protein family HMM PF00196. | 0.545 |
CPS_1262 | CPS_1261 | Hypothetical protein; Identified by Glimmer2; putative. | Sensor histidine kinase; Identified by similarity to GP:13641465; match to protein family HMM PF02518; match to protein family HMM PF07730. | 0.567 |