STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1286Putative metallopeptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193. (966 aa)    
Predicted Functional Partners:
petC
Ubiquinol-cytochrome c reductase, cytochrome c1; Identified by similarity to SP:O31216; match to protein family HMM PF02167.
   
 0.967
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 0.956
petB
Ubiquinol-cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 0.890
CPS_1201
Ferredoxin, 4Fe-4S; Identified by match to protein family HMM PF00037.
  
 
 0.875
fdhB1
Formate dehydrogenase, beta subunit; Identified by similarity to GP:3724144; match to protein family HMM PF01512.
   
 
 0.832
fdhB2
Formate dehydrogenase, beta subunit; Identified by similarity to GP:3724144; match to protein family HMM PF01512.
   
 
 0.832
fdhG1
Formate dehydrogenase, gamma subunit; Identified by similarity to GP:3724143; match to protein family HMM PF01257.
   
 
 0.797
fdhG2
Formate dehydrogenase, gamma subunit; Identified by similarity to GP:3724143; match to protein family HMM PF01257.
   
 
 0.797
CPS_0236
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.784
CPS_0235
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
   
 
 0.779
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.