STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1322Oxidoreductase, 2OG-Fe(II) oxygenase family. (261 aa)    
Predicted Functional Partners:
CPS_1321
Aldehyde dehydrogenase (NAD) family protein; Identified by similarity to GP:6635357; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
 
     0.660
CPS_3257
Identified by match to protein family HMM PF01360.
  
     0.540
CPS_1155
Conserved hypothetical protein; Identified by match to protein family HMM PF01136.
  
     0.506
CPS_3005
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.505
CPS_2163
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01ATA1056; match to protein family HMM PF03690.
  
     0.492
CPS_0149
Leucine-rich repeat protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00560.
  
     0.489
CPS_1347
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
  
 0.455
CPS_4959
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
  
  
 0.455
CPS_1319
Transcriptional regulator; Identified by match to protein family HMM PF01638.
       0.440
CPS_1320
Hypothetical protein; Identified by Glimmer2; putative.
       0.440
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.