STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1349CBS domain protein; Identified by match to protein family HMM PF00571. (186 aa)    
Predicted Functional Partners:
CPS_1350
Hypothetical protein; Identified by Glimmer2; putative.
       0.620
ybeY
Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.502
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.495
CPS_1351
Hypothetical protein; Identified by Glimmer2; putative.
       0.460
CPS_1387
Conserved hypothetical protein; Identified by similarity to OMNI:SO4646.
   
    0.449
CPS_0977
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.444
tpm
Identified by match to protein family HMM PF05724; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.
  
     0.430
CPS_0981
Putative membrane protein; Identified by match to protein family HMM PF07690.
  
     0.423
CPS_0951
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.409
CPS_4266
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01YP2107.
  
     0.403
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.