STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1376Conserved hypothetical protein. (193 aa)    
Predicted Functional Partners:
thiF
Adenylyltransferase ThiF; Identified by similarity to SP:P30138; match to protein family HMM PF00899; match to protein family HMM PF05237.
    
 0.693
CPS_1377
RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.637
CPS_3195
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
     0.605
CPS_1378
Putative transcriptional activator; Identified by similarity to SP:P40685; match to protein family HMM TIGR02451.
     
 0.569
CPS_1379
Conserved hypothetical protein; Identified by similarity to OMNI:SO3386.
     
 0.567
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.545
CPS_1467
Zinc carboxypeptidase-related protein; Identified by match to protein family HMM PF00246.
  
     0.521
CPS_3192
Putative membrane protein.
  
     0.518
sbcC
Exonuclease SbcC; Identified by match to protein family HMM TIGR00618.
    
 0.513
CPS_1373
Conserved hypothetical protein; Identified by similarity to OMNI:SO3377.
 
     0.510
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.