STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CPS_1402Putative C4-dicarboxylate transporter family protein, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786. (426 aa)    
Predicted Functional Partners:
CPS_1403
C4-dicarboxylate transporter family protein, DctQ subunit; Identified by match to protein family HMM PF04290.
 
 0.997
CPS_1265
C4-dicarboxylate transporter family protein, DctQ subunit; Identified by match to protein family HMM PF04290.
  
 0.946
CPS_0130
C4-dicarboxylate transporter family protein, DctQ subunit; Identified by match to protein family HMM PF04290.
  
 0.908
CPS_1404
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.894
CPS_0129
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.792
CPS_1264
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.791
CPS_4916
Putative C4-dicarboxylate-binding periplasmic protein DctP; Identified by similarity to GP:18031990; match to protein family HMM PF03480.
 
   
 0.630
CPS_1401
Conserved hypothetical protein; Identified by similarity to OMNI:SO1411.
       0.470
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.