STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1405Sensor histidine kinase; Identified by similarity to SP:P13799; match to protein family HMM PF02518; match to protein family HMM PF07730. (483 aa)    
Predicted Functional Partners:
CPS_1406
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
     0.948
CPS_1260
Putative nitrate/nitrite DNA-binding response regulator; Identified by similarity to SP:P10957; match to protein family HMM PF00072; match to protein family HMM PF00196.
     0.778
CPS_2033
DNA-binding response regulator, LuxR family; Identified by similarity to SP:P07027; match to protein family HMM PF00072; match to protein family HMM PF00196.
     0.775
CPS_3271
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
     0.753
CPS_0937
DNA-binding response regulator, LuxR family; Identified by similarity to SP:P29369; match to protein family HMM PF00072; match to protein family HMM PF00196.
 
     0.714
CPS_3420
DNA-binding response regulator, LuxR family; Identified by similarity to SP:P29369; match to protein family HMM PF00072; match to protein family HMM PF00196.
 
     0.707
CPS_1932
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
     0.697
CPS_0179
DNA-binding response regulator, LuxR family; Identified by similarity to SP:P29369; match to protein family HMM PF00072; match to protein family HMM PF00196.
 
     0.689
CPS_1404
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.522
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.