STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1449Identified by match to protein family HMM PF00701; Belongs to the DapA family. (304 aa)    
Predicted Functional Partners:
CPS_1447
Putative D-amino acid dehydrogenase, small subunit; Identified by similarity to SP:P29011; match to protein family HMM PF01266.
 
  
 0.977
aldH
Fatty aldehyde dehydrogenase; Identified by similarity to SP:Q56694; match to protein family HMM PF00171.
 
  
 0.924
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
 
 0.896
lhpH
Putative proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). Together with LhpI, is involved in a metabolic pathway that converts t3LHyp to L- proline.
 
  
 0.893
CPS_1450
Putative proline racemase; Identified by similarity to GP:6900003; match to protein family HMM PF05544; Belongs to the proline racemase family.
 
    0.877
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.784
CPS_1174
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMB00680.
 
  
 0.744
CPS_2746
Oxidoreductase, FAD-dependent; Identified by match to protein family HMM PF01266.
 
   
 0.681
pheA
Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:Q02286; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM TIGR01797.
  
  
 0.639
lhpI
Putative ornithine cyclodeaminase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using preferentially NADPH over NADH as the electron donor. Together with LhpH, is involved in a metabolic pathway that converts trans-3-hydroxy-L-proline (t3LHyp) to L-proline. To a much lesser extent, can also reduce Delta(1)-piperideine-2-carboxylate (Pip2C) to L-pipecolate in vitro; however, this activity has likely no physiological significance in vivo since C.psychrerythraea probably possesses no ability to metabolize D-lysine via the L-pipecolate pathway. Does not [...]
 
   
 0.636
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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