STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1467Zinc carboxypeptidase-related protein; Identified by match to protein family HMM PF00246. (301 aa)    
Predicted Functional Partners:
CPS_2872
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
  
     0.619
CPS_4362
Conserved hypothetical protein; Identified by similarity to OMNI:SO3842.
  
     0.617
gspN
General secretion pathway protein N; Identified by match to protein family HMM PF01203.
  
     0.560
CPS_1466
Hypothetical protein; Identified by Glimmer2; putative.
       0.529
CPS_1376
Conserved hypothetical protein.
  
     0.521
CPS_0574
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.511
CPS_0329
Conserved hypothetical protein; Identified by similarity to OMNI:SO0321.
  
     0.496
CPS_2717
Putative sulfatase; Identified by match to protein family HMM PF00884; match to protein family HMM PF08019.
  
     0.450
CPS_0968
Conserved hypothetical protein; Identified by similarity to OMNI:SO0554.
  
     0.447
CPS_0293
Conserved hypothetical protein; Identified by similarity to GP:28806154.
  
     0.425
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.