STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flgDBasal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein. (256 aa)    
Predicted Functional Partners:
flgJ
Flagellar protein FlgJ; Identified by similarity to SP:P15931; match to protein family HMM PF01832; match to protein family HMM TIGR02541.
 
  
 0.999
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.997
flgC
Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
 
 0.997
flgG
Flagellar basal-body rod protein FlgG; Identified by similarity to SP:P16439; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488; Belongs to the flagella basal body rod proteins family.
 
 
 0.995
flgE
Flagellar hook protein FlgE; Identified by similarity to SP:P16322; match to protein family HMM PF00460; match to protein family HMM PF06429.
 
 0.994
flgF
Flagellar basal-body rod protein FlgF; Identified by similarity to SP:P16323; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02490; Belongs to the flagella basal body rod proteins family.
 
 
 0.994
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 
 0.993
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 
 0.993
fliE
Flagellar hook-basal body complex protein FliE; Identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205.
 
 
 0.992
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
 
 0.990
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.