STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1543DTW domain protein; Identified by match to protein family HMM PF03942. (266 aa)    
Predicted Functional Partners:
sixA
Phosphohistidine phosphatase SixA; Identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249.
  
     0.625
CPS_1577
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SF0579.
  
     0.575
CPS_1542
Conserved hypothetical protein; Identified by similarity to GP:12382240.
       0.522
CPS_0123
Putative glpG protein; Identified by similarity to SP:P44783; match to protein family HMM PF01694.
 
     0.513
pssA
CDP-diacylglycerol--serine O-phosphatidyltransferase; Identified by similarity to SP:P23830; match to protein family HMM PF00614.
 
     0.497
CPS_2149
DTW domain protein; Identified by match to protein family HMM PF03942.
  
     0.479
CPS_0434
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01YP0178; match to protein family HMM TIGR02443.
  
     0.459
CPS_2611
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SF2126; match to protein family HMM PF07208; Belongs to the UPF0352 family.
  
     0.424
sdhD
Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
     0.402
ilvM
Acetolactate synthase II, small subunit; Identified by similarity to SP:P13048.
  
     0.400
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.