STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1585Identified by match to protein family HMM PF01401. (619 aa)    
Predicted Functional Partners:
mccA
methylcrotonyl-CoA carboxylase, alpha subunit; Identified by similarity to SP:Q96RQ3; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786.
 
    
 0.820
CPS_2554
Peptidase, M28 family; Identified by similarity to GP:4877698; match to protein family HMM PF01546; match to protein family HMM PF04389.
 
   
 0.726
accC
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
      0.645
CPS_1104
Dipeptidyl peptidase IV; Identified by similarity to GP:1753197; match to protein family HMM PF00326; match to protein family HMM PF00930.
 
     0.621
CPS_3760
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.585
CPS_2653
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.581
CPS_3085
Identified by match to protein family HMM PF01979.
  
    0.570
CPS_0535
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
  
    0.540
CPS_3091
Putative peptidase, M28 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389.
 
   
 0.526
CPS_3369
Identified by match to protein family HMM PF00854; match to protein family HMM TIGR00924.
 
   
 0.519
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.