STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1651Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (255 aa)    
Predicted Functional Partners:
CPS_1652
Conserved hypothetical protein.
 
     0.832
CPS_1654
Conserved hypothetical protein; Identified by similarity to GP:28806276.
 
     0.817
CPS_1653
Conserved hypothetical protein; Identified by similarity to GP:27361834.
 
     0.710
CPS_0293
Conserved hypothetical protein; Identified by similarity to GP:28806154.
  
     0.451
CPS_1793
Conserved hypothetical protein.
  
     0.425
CPS_2672
Conserved hypothetical protein; Identified by similarity to OMNI:CC2974.
  
     0.420
CPS_3432
Conserved hypothetical protein; Identified by similarity to OMNI:PP0765; match to protein family HMM PF06980.
  
     0.420
CPS_1395
Putative membrane protein; Identified by match to protein family HMM PF07670.
  
     0.409
CPS_3600
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
 
   0.407
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.