STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1654Conserved hypothetical protein; Identified by similarity to GP:28806276. (437 aa)    
Predicted Functional Partners:
CPS_1653
Conserved hypothetical protein; Identified by similarity to GP:27361834.
 
     0.950
CPS_1652
Conserved hypothetical protein.
 
     0.909
CPS_1651
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.817
CPS_0806
Putative membrane protein.
 
     0.699
narK
Nitrate permease; Identified by similarity to GP:6007443; match to protein family HMM PF07690; match to protein family HMM TIGR00886.
  
     0.441
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.439
CPS_2803
Putative membrane protein.
 
     0.415
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.