STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1657Conserved hypothetical protein; Identified by similarity to OMNI:SO0366. (211 aa)    
Predicted Functional Partners:
CPS_1658
Putative tRNA-(MS[2]IO[6]A)-hydroxylase; Identified by similarity to SP:Q08015.
 
     0.780
CPS_0016
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.769
CPS_1347
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.733
CPS_1286
Putative metallopeptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.
 
     0.638
CPS_1157
Identified by match to protein family HMM PF00293.
  
   
 0.630
CPS_4988
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by similarity to SP:P29956; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.612
CPS_0733
Conserved hypothetical protein; Identified by similarity to OMNI:SO0835.
  
     0.531
CPS_4320
Identified by match to protein family HMM PF01564.
  
     0.529
speE
Spermine/spermidine synthase family protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
     0.525
CPS_0580
Tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706.
  
  
 0.492
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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