STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1668Identified by similarity to SP:Q03520; match to protein family HMM PF02798. (255 aa)    
Predicted Functional Partners:
CPS_1667
Identified by match to protein family HMM PF00753.
   
   0.690
CPS_1669
Hypothetical protein; Identified by Glimmer2; putative.
       0.576
CPS_1639
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML0954.
  
     0.548
CPS_0170
Putative glutathione S-transferase; Identified by match to protein family HMM PF02798.
  
     0.539
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.530
CPS_2648
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
  
    0.474
CPS_2423
Conserved hypothetical protein; Identified by similarity to OMNI:VC0131.
  
     0.449
lysS
lysyl-tRNA synthetase; Identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.444
CPS_3987
Identified by match to protein family HMM PF00149.
  
     0.412
CPS_1895
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.403
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.