STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CPS_1674Putative alkylhydroperoxidase AhpD family core domain protein; Identified by similarity to OMNI:NTL01NSB0023. (181 aa)    
Predicted Functional Partners:
acpD2
FMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
     0.765
CPS_1396
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
    0.754
dehII
Haloacid dehalogenase, type II; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493.
 
     0.737
CPS_1681
Transcriptional regulator, TetR family; Identified by similarity to OMNI:NTL03ST1095; match to protein family HMM PF00440.
 
    0.680
CPS_1673
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML6200; match to protein family HMM PF07045.
       0.606
CPS_3315
Putative nitrate ABC transporter, permease protein; Identified by similarity to GP:2642138; match to protein family HMM PF00528.
  
  
 0.510
CPS_1672
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
   
   0.444
CPS_3394
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMA01044.
  
     0.436
CPS_0532
Identified by match to protein family HMM PF00903.
  
     0.423
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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