STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1805Conserved hypothetical protein. (197 aa)    
Predicted Functional Partners:
CPS_1804
Protein kinase domain protein; Identified by similarity to GP:18072166.
 
 
   0.887
lepB2
Signal peptidase I; Identified by similarity to SP:P26844; match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
       0.776
CPS_1802
Hypothetical protein; Identified by Glimmer2; putative.
       0.565
CPS_1794
Protein kinase domain protein; Identified by similarity to GP:18072166.
 
 
   0.562
rseA
sigma-E factor negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplas [...]
  
 
 0.560
CPS_1806
Hypothetical protein; Identified by Glimmer2; putative.
       0.498
CPS_1801
Hypothetical protein; Identified by Glimmer2; putative.
       0.489
CPS_0450
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.443
CPS_0776
Putative permease; Identified by match to protein family HMM PF02687.
  
     0.441
CPS_0106
Conserved hypothetical protein; Identified by similarity to GP:28809591; match to protein family HMM PF04337; Belongs to the UPF0502 family.
  
     0.418
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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