STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1839Outer membrane efflux protein; Identified by match to protein family HMM PF02321. (466 aa)    
Predicted Functional Partners:
CPS_1840
Conserved hypothetical protein.
 
 0.982
CPS_1842
Putative membrane protein; Identified by similarity to GP:27362183.
 
   
 0.949
CPS_1841
Putative membrane protein; Identified by similarity to OMNI:VC1608.
 
   
 0.948
CPS_1250
Conserved hypothetical protein; Identified by similarity to GP:28808656.
 
 
 0.714
CPS_3029
Conserved hypothetical protein; Identified by match to protein family HMM PF00529.
 
 
 0.645
CPS_1843
Hypothetical protein; Identified by Glimmer2; putative.
       0.545
CPS_4163
Secretion protein, HlyD family; Identified by similarity to SP:P27303; similarity to SP:P32716; match to protein family HMM PF00529.
 
 
 0.533
CPS_2429
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
  
 
 0.492
CPS_4324
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
  
 
 0.492
CPS_4509
Putative toxin secretion protein; Identified by similarity to SP:P22519.
  
 
 0.492
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.