STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1891Conserved hypothetical protein; Identified by similarity to GP:27354466. (408 aa)    
Predicted Functional Partners:
CPS_1892
Conserved hypothetical protein; Identified by similarity to GP:25989532; match to protein family HMM TIGR02276.
 
  
 0.949
CPS_1894
Putative daunorubicin resistance ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
   
 0.931
CPS_1893
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.930
exaB
Cytochrome c550; Identified by similarity to GP:3928679; match to protein family HMM PF00034.
 
     0.864
CPS_1889
Conserved hypothetical protein; Identified by similarity to OMNI:PP2676; Belongs to the bacterial solute-binding protein 3 family.
 
  
 0.863
CPS_1928
Putative sulfonate ABC transporter, periplasmic sulfonate-binding protein; Identified by similarity to GP:27354477.
 
   
 0.804
exaA
Quinoprotein alcohol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011.
 
    0.795
CPS_1929
Putative sulfonate ABC transporter, permease protein; Identified by similarity to SP:P40401; match to protein family HMM PF00528.
 
     0.787
CPS_1883
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA01975.
  
    0.735
CPS_3414
Putative branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.732
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.