STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1903Glutamate synthase domain protein; Identified by similarity to SP:P39812; match to protein family HMM PF01645; Belongs to the glutamate synthase family. (515 aa)    
Predicted Functional Partners:
CPS_0762
Glutamate synthase, NADH/NADPH, small subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.
 
 0.978
gltD
Glutamate synthase, small subunit; Identified by similarity to SP:P09832; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318.
 
 
 0.973
CPS_0761
Putative glutamate synthase, ferredoxin-dependent; Identified by similarity to SP:P55037; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
 
 
0.874
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
 
 
0.872
CPS_2904
Glu/Leu/Phe/Val dehydrogenase; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.755
fadH2
2,4-dienoyl-CoA reductase; Identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992.
  
 
 0.746
CPS_1904
Identified by match to protein family HMM PF00753.
       0.581
CPS_1905
Identified by similarity to SP:Q03520; match to protein family HMM PF02798.
       0.517
gcvP1
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.469
gcvP2
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.469
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.