STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1930Putative sulfonate ABC transporter, ATP-binding protein; Identified by similarity to SP:P97027; match to protein family HMM PF00005. (262 aa)    
Predicted Functional Partners:
CPS_1929
Putative sulfonate ABC transporter, permease protein; Identified by similarity to SP:P40401; match to protein family HMM PF00528.
 
  
 0.963
CPS_0685
Conserved hypothetical protein; Identified by similarity to GP:27361783.
  
 
 0.954
CPS_3316
Putative nitrate ABC transporter, periplasmic nitrate-binding protein; Identified by similarity to SP:P38043.
  
 0.948
sapD
Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.910
CPS_1928
Putative sulfonate ABC transporter, periplasmic sulfonate-binding protein; Identified by similarity to GP:27354477.
 
  
 0.840
CPS_3315
Putative nitrate ABC transporter, permease protein; Identified by similarity to GP:2642138; match to protein family HMM PF00528.
  
 0.811
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.717
CPS_1798
ATP-dependent peptidase, M41 family; Identified by similarity to GP:8051696; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07724; Belongs to the AAA ATPase family.
 
     0.689
CPS_1795
ATP-dependent peptidase, M41 family; Identified by similarity to GP:8051696; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07724; Belongs to the AAA ATPase family.
 
     0.680
cysS
cysteinyl-tRNA synthetase; Identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.610
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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