STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1957Putative RND efflux system protein; Identified by similarity to SP:P13509; match to protein family HMM PF02321. (444 aa)    
Predicted Functional Partners:
CPS_1958
Putative RND efflux system protein, MFP subunit.
 
 
 0.959
CPS_1959
Putative RND efflux system protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.953
CPS_1956
Putative RND efflux system protein; Identified by match to protein family HMM PF01545.
 
   
 0.645
cusA
Cation efflux system protein CusA; Identified by similarity to SP:P38054; match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.637
cusB
Cation efflux system protein CusB; Identified by similarity to SP:P77239; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.602
czcA
Cation efflux system protein CzcA; Identified by similarity to SP:P94177; match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.558
CPS_2867
Heavy metal efflux pump, CzcA family; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.541
CPS_4488
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
    0.522
CPS_4601
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0610.
  
     0.506
CPS_1955
Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376.
 
  
 0.495
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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