CPS_1962 protein (Colwellia psychrerythraea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CPS_1962

Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P76397; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (393 aa)

Predicted Functional Partners:

CPS_1961

0.936

CPS_2667

0.807

CPS_1234

0.746

CPS_2563

0.726

CPS_5033

0.708

CPS_0745

0.706

CPS_3927

0.697

CPS_1355

0.682

CPS_3926

0.671

CPS_1537

0.666

Your Current Organism:

Colwellia psychrerythraea

NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CPS_0745	CPS_1234	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.661
CPS_0745	CPS_1962	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P76397; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.706
CPS_0745	CPS_3927	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.695
CPS_0745	CPS_5033	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.581
CPS_1234	CPS_0745	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.661
CPS_1234	CPS_1355	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Identified by similarity to GP:13539232; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	0.739
CPS_1234	CPS_1537	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	0.732
CPS_1234	CPS_1961	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.683
CPS_1234	CPS_1962	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P76397; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.746
CPS_1234	CPS_2563	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.653
CPS_1234	CPS_2667	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.708
CPS_1234	CPS_3926	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.740
CPS_1355	CPS_1234	Identified by similarity to GP:13539232; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.739
CPS_1355	CPS_1962	Identified by similarity to GP:13539232; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P76397; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.682
CPS_1355	CPS_3926	Identified by similarity to GP:13539232; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.917
CPS_1355	CPS_3927	Identified by similarity to GP:13539232; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.977
CPS_1355	CPS_5033	Identified by similarity to GP:13539232; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.688
CPS_1537	CPS_1234	Identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.732
CPS_1537	CPS_1962	Identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P76397; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.666
CPS_1537	CPS_3927	Identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.773

page 1 of 4

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About