STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1985Allophanate hydrolase domain protein/urea amidolyase, homolog; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724. (322 aa)    
Predicted Functional Partners:
CPS_1984
Conserved hypothetical protein TIGR00370; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.
 
 0.999
CPS_1983
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.997
mccA
methylcrotonyl-CoA carboxylase, alpha subunit; Identified by similarity to SP:Q96RQ3; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786.
 
  
 0.920
accC
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
      0.911
CPS_2001
Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.
 
  
 0.794
CPS_1433
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
  
    0.560
CPS_3590
Transcriptional regulator, IclR family; Identified by similarity to SP:Q52154; match to protein family HMM PF01614; match to protein family HMM TIGR02431.
  
    0.560
CPS_4891
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
  
    0.560
CPS_1982
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.443
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.