STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1988Putative membrane protein; Identified by similarity to GP:28806528. (249 aa)    
Predicted Functional Partners:
CPS_1989
Cytochrome oxidase maturation protein, cbb3-type; Identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847.
 
     0.908
CPS_1990
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
   
 0.867
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.844
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.841
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781.
 
     0.838
CPS_1991
Conserved hypothetical protein; Identified by similarity to OMNI:SO2360.
 
   
 0.811
CPS_0273
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
   
 0.781
CPS_4350
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
   
 0.781
fnr
Fumarate/nitrate reduction regulatory protein; Identified by similarity to SP:P03019; match to protein family HMM PF00027; match to protein family HMM PF00325.
 
    0.704
CPS_4111
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:VC1052; match to protein family HMM PF04304.
   
    0.562
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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