STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1997Putative lipoprotein; Identified by similarity to OMNI:SO2365. (157 aa)    
Predicted Functional Partners:
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.881
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781.
  
 
 0.772
CPS_0701
Putative membrane protein; Identified by similarity to SP:O67062.
  
 
 0.666
ccoQ
Cytochrome c oxidase, cbb3-type, CcoQ subunit; Identified by similarity to GP:21702710; match to protein family HMM PF05545.
  
  
 0.616
CPS_1996
Transcriptional regulator, Crp/Fnr family; Identified by similarity to SP:P47200; match to protein family HMM PF00027; match to protein family HMM PF00325.
  
  
 0.536
CPS_3439
Cytochrome c2; Identified by similarity to SP:P00082; match to protein family HMM PF00034.
   
   0.517
petC
Ubiquinol-cytochrome c reductase, cytochrome c1; Identified by similarity to SP:O31216; match to protein family HMM PF02167.
    
 
 0.475
petB
Ubiquinol-cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.469
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.469
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.459
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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