Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPS_2001Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486. (252 aa)    
Predicted Functional Partners:
CPS_1984
Conserved hypothetical protein TIGR00370; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.
 
  
 0.851
CPS_1985
Allophanate hydrolase domain protein/urea amidolyase, homolog; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.
 
  
 0.804
CPS_2208
TPR domain protein; May be involved in cell division.
   
    0.706
CPS_1983
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    
 0.681
CPS_0134
Conserved hypothetical protein; Identified by match to protein family HMM PF01936.
     
 0.607
CPS_2668
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0634.
  
  
 0.570
CPS_2000
Conserved hypothetical protein; Identified by similarity to OMNI:VC2235.
       0.563
pepD
Aminoacyl-histidine dipeptidase; Identified by similarity to SP:P15288; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893.
  
    0.475
tmcA
Conserved hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
  
     0.425
CPS_3716
Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722; match to protein family HMM PF02018; match to protein family HMM PF02412.
  
  
 0.405
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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