STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2003Identified by similarity to SP:P17447; similarity to SP:P54417; match to protein family HMM PF02028; match to protein family HMM TIGR00842; Belongs to the BCCT transporter (TC 2.A.15) family. (535 aa)    
Predicted Functional Partners:
CPS_2002
Conserved hypothetical protein; Identified by similarity to GP:28806020; match to protein family HMM PF02698.
       0.519
CPS_3938
Conserved hypothetical protein; Identified by similarity to OMNI:SO3298.
 
     0.478
CPS_3854
Conserved hypothetical protein; Identified by similarity to OMNI:SO1412.
 
     0.476
CPS_4006
Conserved hypothetical protein; Identified by similarity to OMNI:SO3298.
 
     0.476
CPS_4910
Conserved hypothetical protein; Identified by similarity to OMNI:SO1412.
 
     0.475
CPS_1335
Putative transporter, BCCT family protein.
      
 0.458
CPS_4009
Putative transporter, BCCT family protein.
      
 0.458
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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