STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2029Amino acid permease family protein; Identified by similarity to SP:P33016; match to protein family HMM PF00324. (442 aa)    
Predicted Functional Partners:
CPS_2030
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
 
   
 0.801
CPS_0506
Putative sucrose phosphorylase; Identified by similarity to SP:P33910; match to protein family HMM PF00128.
   
 0.591
CPS_0984
Identified by match to protein family HMM PF00128.
   
 0.591
CPS_0985
Putative alpha amylase; Identified by similarity to SP:Q05884; match to protein family HMM PF00128.
   
 0.591
CPS_3370
Alpha-amylase; Identified by similarity to SP:P22630; match to protein family HMM PF00128.
   
 0.591
CPS_2028
Conserved hypothetical protein; Identified by similarity to OMNI:SO0547; match to protein family HMM TIGR02001.
       0.522
CPS_2031
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
     
 0.513
trpC/F
Indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Identified by similarity to SP:P00910; match to protein family HMM PF00218; match to protein family HMM PF00697; Belongs to the TrpC family.
    
 
 0.491
CPS_2033
DNA-binding response regulator, LuxR family; Identified by similarity to SP:P07027; match to protein family HMM PF00072; match to protein family HMM PF00196.
     
 0.466
CPS_2032
Sensor histidine kinase; Identified by similarity to OMNI:NTL02SA1888; match to protein family HMM PF02518.
       0.457
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.