STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2060Hypothetical protein; Identified by Glimmer2; putative. (79 aa)    
Predicted Functional Partners:
fdhA1
Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.
  
 0.990
fdhG1
Formate dehydrogenase, gamma subunit; Identified by similarity to GP:3724143; match to protein family HMM PF01257.
   
 0.987
fdhB1
Formate dehydrogenase, beta subunit; Identified by similarity to GP:3724144; match to protein family HMM PF01512.
   
 0.978
fdhA2
Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.
  
 0.976
fdhG2
Formate dehydrogenase, gamma subunit; Identified by similarity to GP:3724143; match to protein family HMM PF01257.
   
 0.966
CPS_4039
Putative glutathione-independent formaldehyde dehydrogenase; Identified by similarity to SP:P46154; match to protein family HMM PF00107.
    
 0.943
fdhB2
Formate dehydrogenase, beta subunit; Identified by similarity to GP:3724144; match to protein family HMM PF01512.
   
 0.942
CPS_4026
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.939
CPS_0819
Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.
    
  0.905
CPS_4353
N-formylglutamate deformylase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.
     
  0.900
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.