STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2078Conserved hypothetical protein; Identified by similarity to OMNI:SOA0099; match to protein family HMM PF07969. (576 aa)    
Predicted Functional Partners:
CPS_2077
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.625
CPS_2993
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.483
CPS_3329
Conserved hypothetical protein; Identified by similarity to GP:29541645; match to protein family HMM PF07681.
 
     0.470
fsxA
fxsA protein; Identified by similarity to SP:P37147; match to protein family HMM PF04186.
  
    0.460
CPS_2074
Xaa-Pro dipeptidase; Identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969.
 
     0.434
CPS_2075
Putative lipoprotein; Identified by similarity to GP:28805614; match to protein family HMM PF07969.
 
    
0.417
CPS_2691
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
     0.409
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.