STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2081Putative membrane protein. (464 aa)    
Predicted Functional Partners:
CPS_2082
Putative glyoxylate reductase; Identified by similarity to GP:13516509; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 0.655
CPS_2080
Identified by match to protein family HMM PF00920; Belongs to the IlvD/Edd family.
  
  
 0.521
dxnG
3-oxoadipate CoA-succinyl transferase, alpha subunit; Identified by similarity to GP:4007784; match to protein family HMM PF01144; match to protein family HMM TIGR02429.
 
    0.496
dxnH
3-oxoadipate CoA-succinyl transferase, beta subunit; Identified by similarity to GP:4007785; match to protein family HMM PF01144; match to protein family HMM TIGR02428.
 
    0.468
CPS_3695
Carbohydrate kinase, thermoresistant glucokinase family; Identified by match to protein family HMM TIGR01313.
  
  
 0.442
CPS_2083
FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.
       0.421
dsdA
D-serine ammonia-lyase; Identified by similarity to SP:P00926; match to protein family HMM PF00291; match to protein family HMM TIGR02035; Belongs to the serine/threonine dehydratase family. DsdA subfamily.
 
  
 0.403
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.