STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2090Chain length determinant family protein; Identified by similarity to GP:5566006; match to protein family HMM PF02706. (322 aa)    
Predicted Functional Partners:
CPS_3645
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
 
 0.880
CPS_3249
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
 
 0.680
CPS_1415
Conserved hypothetical protein; Identified by similarity to OMNI:SO1991.
  
     0.604
CPS_3253
Putative polysaccharide pyruvyl transferase.
 
  
 0.524
CPS_3252
Capsular polysaccharide biosynthesis protein, homolog; Identified by similarity to GP:6601342.
 
  
 0.494
CPS_0578
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563.
  
 
 0.489
CPS_5025
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:P76388; match to protein family HMM PF02563.
  
 
 0.489
CPS_2092
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02719; match to protein family HMM PF07993.
  
  
 0.488
wecA
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Catalyzes the transfer of the GlcNAc-1-phosphate moiety from UDP-GlcNAc onto the carrier lipid undecaprenyl phosphate (C55-P), yielding GlcNAc-pyrophosphoryl-undecaprenyl (GlcNAc-PP-C55). Belongs to the glycosyltransferase 4 family. WecA subfamily.
     
 0.484
CPS_3250
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS2290.
  
     0.454
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.