STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2098Hypothetical protein; Identified by Glimmer2; putative. (42 aa)    
Predicted Functional Partners:
CPS_2093
Flagellin modification protein/polysaccharide biosynthesis protein; Identified by similarity to GP:5616171; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
       0.581
CPS_2094
Putative acylneuraminate cytidylyltransferase; Identified by similarity to GP:4741793; match to protein family HMM PF02348.
       0.581
CPS_2095
Putative flagellin modification protein FlmD; Identified by similarity to GP:5616173.
       0.581
CPS_2096
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:NTL01RS1320.
       0.581
CPS_2097
neuB protein; Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
       0.581
CPS_2092
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02719; match to protein family HMM PF07993.
       0.528
CPS_2099
Hypothetical protein; Identified by Glimmer2; putative.
       0.445
CPS_2100
Putative polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
       0.408
CPS_2101
Hypothetical protein; Identified by Glimmer2; putative.
       0.408
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.