STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2119ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (241 aa)    
Predicted Functional Partners:
CPS_2120
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.962
sapD
Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.893
CPS_0776
Putative permease; Identified by match to protein family HMM PF02687.
 
 
 0.863
CPS_2118
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
 
   0.853
CPS_3505
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.835
CPS_4417
Putative ABC transporter, permease protein; Identified by similarity to PIR:AG0166; match to protein family HMM PF02687.
 
 
 0.828
CPS_4700
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.811
CPS_2122
Sensor histidine kinase; Identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
     0.797
CPS_0575
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.785
CPS_4415
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
 
   0.752
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.