STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2152Thrombospondin type 3 repeat family protein/Calx-beta domain protein; Identified by match to protein family HMM PF03160. (1362 aa)    
Predicted Functional Partners:
CPS_0684
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.722
CPS_4627
Serine protease, trypsin family; Identified by match to protein family HMM PF00089; match to protein family HMM PF02225.
  
     0.612
CPS_1206
Putative outer membrane porin; Identified by match to protein family HMM PF00267.
  
    0.570
CPS_1415
Conserved hypothetical protein; Identified by similarity to OMNI:SO1991.
  
     0.555
CPS_1809
Putative protease; Identified by similarity to GP:4063015; match to protein family HMM PF00353.
 
 
 0.553
CPS_2708
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
 
     0.542
CPS_4700
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.518
CPS_0482
Serine protease; Identified by similarity to SP:Q92743; match to protein family HMM PF00089.
  
    0.508
CPS_0128
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.505
CPS_0481
FHA domain protein; Identified by similarity to OMNI:NTL01BL0696; match to protein family HMM PF00498.
  
     0.502
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.