STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_21533-oxoacyl-(acyl carrier protein) synthase III, homolog; Identified by similarity to GP:15488029. (349 aa)    
Predicted Functional Partners:
pfaC
Polyunsaturated fatty acid synthase PfaC; Identified by similarity to GP:6691656; match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM PF07977; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.956
CPS_2154
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.
 
  
 0.955
CPS_2155
Identified by match to protein family HMM PF00501.
 
   
 0.938
pfaA
Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.
 
  
 0.908
CPS_2156
3-beta hydroxysteroid dehydrogenase/isomerase family protein; Identified by similarity to SP:Q15738; match to protein family HMM PF01073; match to protein family HMM PF07993.
 
   
 0.907
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by similarity to SP:P25715; match to protein family HMM PF00698; match to protein family HMM TIGR00128.
 
  
 0.843
pfaD
Polyunsaturated fatty acid synthase PfaD; Identified by similarity to GP:6691657.
 
  
 0.799
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.773
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.747
CPS_2157
Thioesterase family protein; Identified by similarity to GP:6691653; match to protein family HMM PF03061.
 
 
 0.720
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.